J3_6HRM_018

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HRM_018 not in the Motif Atlas

Geometric match to J3_8VTW_002

Geometric discrepancy: 0.0724

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6HRM|1|1|C|2204
6HRM|1|1|A|2205
6HRM|1|1|G|2206
*
6HRM|1|1|C|2238
6HRM|1|1|G|2239
6HRM|1|1|A|2240
6HRM|1|1|A|2241
6HRM|1|1|C|2242
*
6HRM|1|1|G|2266
6HRM|1|1|A|2267
6HRM|1|1|U|2268
6HRM|1|1|G|2269

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2