J3_6HRM_032
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 6HRM|1|1|A|2010, 6HRM|1|1|A|2014
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HRM_032 not in the Motif Atlas
- Geometric match to J3_5J7L_066
- Geometric discrepancy: 0.0725
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6HRM|1|1|G|1536
6HRM|1|1|C|1537
*
6HRM|1|1|G|1980
6HRM|1|1|C|1981
6HRM|1|1|G|1982
6HRM|1|1|A|1983
6HRM|1|1|A|1984
6HRM|1|1|A|1985
6HRM|1|1|A|1986
6HRM|1|1|G|1987
6HRM|1|1|A|1988
6HRM|1|1|A|1989
6HRM|1|1|C|1990
*
6HRM|1|1|G|2002
6HRM|1|1|A|2003
6HRM|1|1|G|2004
6HRM|1|1|U|2005
6HRM|1|1|G|2006
6HRM|1|1|A|2007
6HRM|1|1|A|2008
6HRM|1|1|A|2009
6HRM|1|1|A|2010
6HRM|1|1|A|2011
6HRM|1|1|G|2012
6HRM|1|1|A|2013
6HRM|1|1|A|2014
6HRM|1|1|C|2015
6HRM|1|1|C|2016
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
Coloring options: