J3_6HRM_033
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6HRM|1|1|U|1540, 6HRM|1|1|U|1954, 6HRM|1|1|C|1962
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HRM_033 not in the Motif Atlas
- Geometric match to J3_5J7L_067
- Geometric discrepancy: 0.0574
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6HRM|1|1|C|1538
6HRM|1|1|C|1539
6HRM|1|1|U|1540
6HRM|1|1|G|1541
*
6HRM|1|1|C|1951
6HRM|1|1|G|1952
6HRM|1|1|A|1953
6HRM|1|1|U|1954
6HRM|1|1|A|1955
6HRM|1|1|G|1956
6HRM|1|1|U|1957
6HRM|1|1|G|1958
6HRM|1|1|A|1959
6HRM|1|1|A|1960
6HRM|1|1|C|1961
6HRM|1|1|C|1962
6HRM|1|1|A|1963
6HRM|1|1|G|1964
6HRM|1|1|U|1965
6HRM|1|1|A|1966
6HRM|1|1|C|1967
*
6HRM|1|1|G|1974
6HRM|1|1|G|1975
6HRM|1|1|A|1976
6HRM|1|1|A|1977
6HRM|1|1|A|1978
6HRM|1|1|G|1979
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L23
- Chain d
- 50S ribosomal protein L34
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