J3_6HTQ_001

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HTQ_001 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.1656

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

6HTQ|1|A|G|30
6HTQ|1|A|C|31
*
6HTQ|1|A|G|521
6HTQ|1|A|U|522
6HTQ|1|A|G|523
6HTQ|1|A|A|524
6HTQ|1|A|A|525
6HTQ|1|A|A|526
6HTQ|1|A|A|527
6HTQ|1|A|G|528
*
6HTQ|1|A|C|555
6HTQ|1|A|C|556

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain U

50S ribosomal protein L24