J3_6HTQ_006

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAAUG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HTQ_006 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.1711

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6HTQ|1|A|C|1337
6HTQ|1|A|G|1338
6HTQ|1|A|A|1339
6HTQ|1|A|A|1340
6HTQ|1|A|U|1341
6HTQ|1|A|G|1342
*
6HTQ|1|A|C|1670
6HTQ|1|A|G|1671
6HTQ|1|A|A|1672
*
6HTQ|1|A|U|1684
6HTQ|1|A|A|1685
6HTQ|1|A|A|1686
6HTQ|1|A|G|1687

Current chains

Chain A

23S ribosomal RNA

Nearby chains