J3_6HTQ_007

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

6HTQ|1|A|A|1654, 6HTQ|1|A|A|1655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HTQ_007 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1752

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

6HTQ|1|A|C|1344
6HTQ|1|A|U|1345
6HTQ|1|A|A|1346
6HTQ|1|A|A|1347
6HTQ|1|A|G|1348
*
6HTQ|1|A|C|1650
6HTQ|1|A|G|1651
6HTQ|1|A|C|1652
6HTQ|1|A|A|1653
6HTQ|1|A|A|1654
6HTQ|1|A|A|1655
6HTQ|1|A|C|1656
*
6HTQ|1|A|G|1665
6HTQ|1|A|U|1666
6HTQ|1|A|A|1667
6HTQ|1|A|G|1668

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34