J3_6HTQ_018
3D structure
- PDB id
- 6HTQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUACC*GGGCUA
- Length
- 27 nucleotides
- Bulged bases
- 6HTQ|1|a|A|985, 6HTQ|1|a|G|986, 6HTQ|1|a|A|988
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HTQ_018 not in the Motif Atlas
- Homologous match to J3_6CZR_062
- Geometric discrepancy: 0.1764
- The information below is about J3_6CZR_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59791.1
- Basepair signature
- cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6HTQ|1|a|U|965
6HTQ|1|a|U|966
6HTQ|1|a|U|967
6HTQ|1|a|A|968
6HTQ|1|a|A|969
6HTQ|1|a|U|970
6HTQ|1|a|U|971
6HTQ|1|a|C|972
*
6HTQ|1|a|G|983
6HTQ|1|a|A|984
6HTQ|1|a|A|985
6HTQ|1|a|G|986
6HTQ|1|a|A|987
6HTQ|1|a|A|988
6HTQ|1|a|C|989
6HTQ|1|a|C|990
6HTQ|1|a|U|991
6HTQ|1|a|U|992
6HTQ|1|a|A|993
6HTQ|1|a|C|994
6HTQ|1|a|C|995
*
6HTQ|1|a|G|1229
6HTQ|1|a|G|1230
6HTQ|1|a|G|1231
6HTQ|1|a|C|1232
6HTQ|1|a|U|1233
6HTQ|1|a|A|1234
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S19
- Chain u
- Transfer RNA; tRNA
- Chain x
- GTP pyrophosphokinase
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