J3_6HTQ_032

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6HTQ|1|A|A|2547, 6HTQ|1|A|U|2548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HTQ_032 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1576

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6HTQ|1|A|C|2546
6HTQ|1|A|A|2547
6HTQ|1|A|U|2548
6HTQ|1|A|C|2549
*
6HTQ|1|A|G|2574
6HTQ|1|A|U|2575
6HTQ|1|A|U|2576
*
6HTQ|1|A|A|2590
6HTQ|1|A|U|2591
6HTQ|1|A|U|2592
6HTQ|1|A|A|2593
6HTQ|1|A|A|2594
6HTQ|1|A|A|2595
6HTQ|1|A|G|2596

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14