J3_6I0Y_019

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6I0Y_019 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.064

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6I0Y|1|A|G|1424
6I0Y|1|A|G|1425
6I0Y|1|A|G|1426
6I0Y|1|A|A|1427
6I0Y|1|A|C|1428
6I0Y|1|A|G|1429
*
6I0Y|1|A|C|1564
6I0Y|1|A|C|1565
*
6I0Y|1|A|G|1568
6I0Y|1|A|A|1569
6I0Y|1|A|A|1570
6I0Y|1|A|A|1571
6I0Y|1|A|A|1572
6I0Y|1|A|G|1573
6I0Y|1|A|C|1574

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2