J3_6I7O_001
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- AG*CGCAAAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6I7O_001 not in the Motif Atlas
- Geometric match to J3_8C3A_082
- Geometric discrepancy: 0.0896
- The information below is about J3_8C3A_082
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.2
- Basepair signature
- cWW-F-cWW-F-F-cSW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6I7O|1|2|A|41
6I7O|1|2|G|42
*
6I7O|1|2|C|433
6I7O|1|2|G|434
6I7O|1|2|C|435
6I7O|1|2|A|436
6I7O|1|2|A|437
6I7O|1|2|A|438
6I7O|1|2|U|439
*
6I7O|1|2|A|464
6I7O|1|2|G|465
6I7O|1|2|U|466
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain W
- 40S ribosomal protein S9-A
- Chain c
- 40S ribosomal protein S23-A
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