3D structure

PDB id
6I7O (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
UG*UGUC*GAUAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6I7O_011 not in the Motif Atlas
Homologous match to J3_8C3A_085
Geometric discrepancy: 0.1442
The information below is about J3_8C3A_085
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76043.2
Basepair signature
cWW-F-F-F-F-tSS-cWW-cWW
Number of instances in this motif group
3

Unit IDs

6I7O|1|2|U|1293
6I7O|1|2|G|1294
*
6I7O|1|2|U|1303
6I7O|1|2|G|1304
6I7O|1|2|U|1305
6I7O|1|2|C|1306
*
6I7O|1|2|G|1318
6I7O|1|2|A|1319
6I7O|1|2|U|1320
6I7O|1|2|A|1321
6I7O|1|2|A|1322

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain G
40S ribosomal protein S17-A
Chain P
40S ribosomal protein S0-A
Chain R
40S ribosomal protein S2

Coloring options:


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