J3_6I7O_019

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6I7O_019 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.0911

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6I7O|1|2b|C|1161
6I7O|1|2b|C|1162
6I7O|1|2b|A|1163
6I7O|1|2b|G|1164
*
6I7O|1|2b|C|1581
6I7O|1|2b|U|1582
6I7O|1|2b|A|1583
6I7O|1|2b|G|1584
6I7O|1|2b|U|1585
6I7O|1|2b|A|1586
6I7O|1|2b|A|1587
*
6I7O|1|2b|U|1609
6I7O|1|2b|G|1610
6I7O|1|2b|A|1611
6I7O|1|2b|U|1612
6I7O|1|2b|U|1613
6I7O|1|2b|A|1614
6I7O|1|2b|C|1615
6I7O|1|2b|G|1616

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Bb

40S ribosomal protein S5

Chain Fb

40S ribosomal protein S16-A

Chain Lb

40S ribosomal protein S28-A