J3_6I7O_031

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UAG*CGUAG*UCGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6I7O_031 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.1188

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6I7O|1|BQ|U|829
6I7O|1|BQ|A|830
6I7O|1|BQ|G|831
*
6I7O|1|BQ|C|863
6I7O|1|BQ|G|864
6I7O|1|BQ|U|865
6I7O|1|BQ|A|866
6I7O|1|BQ|G|867
*
6I7O|1|BQ|U|892
6I7O|1|BQ|C|893
6I7O|1|BQ|G|894
6I7O|1|BQ|A|895

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AW

60S ribosomal protein L2-A

Chain BF

60S ribosomal protein L19-A

Chain BN

60S ribosomal protein L34-A