J3_6I7O_038

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AUUG*CUUAUU*AAGACAUU

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6I7O_038 not in the Motif Atlas

Homologous match to J3_8C3A_008

Geometric discrepancy: 0.133

The information below is about J3_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_18654.1

Basepair signature

cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F

Number of instances in this motif group

2

Unit IDs

6I7O|1|BQ|A|2432
6I7O|1|BQ|U|2433
6I7O|1|BQ|U|2434
6I7O|1|BQ|G|2435
*
6I7O|1|BQ|C|2512
6I7O|1|BQ|U|2513
6I7O|1|BQ|U|2514
6I7O|1|BQ|A|2515
6I7O|1|BQ|U|2516
6I7O|1|BQ|U|2517
*
6I7O|1|BQ|A|2590
6I7O|1|BQ|A|2591
6I7O|1|BQ|G|2592
6I7O|1|BQ|A|2593
6I7O|1|BQ|C|2594
6I7O|1|BQ|A|2595
6I7O|1|BQ|U|2596
6I7O|1|BQ|U|2597

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8-A

Chain AC

60S ribosomal protein L36-A

Chain AQ

60S ribosomal protein L15-A

Chain AW

60S ribosomal protein L2-A