J3_6I7O_047
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 6I7O|1|YQ|A|607
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6I7O_047 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.1216
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6I7O|1|YQ|U|502
6I7O|1|YQ|C|503
*
6I7O|1|YQ|G|588
6I7O|1|YQ|A|589
6I7O|1|YQ|G|590
6I7O|1|YQ|G|591
6I7O|1|YQ|A|592
6I7O|1|YQ|C|593
6I7O|1|YQ|U|594
6I7O|1|YQ|G|595
6I7O|1|YQ|C|596
6I7O|1|YQ|G|597
*
6I7O|1|YQ|C|606
6I7O|1|YQ|A|607
6I7O|1|YQ|A|608
6I7O|1|YQ|G|609
6I7O|1|YQ|G|610
6I7O|1|YQ|A|611
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain YE
- 60S ribosomal protein L4-A
- Chain YG
- 60S ribosomal protein L32
- Chain YM
- 60S ribosomal protein L6-A
- Chain YO
- 60S ribosomal protein L7-A
Coloring options: