J3_6I7O_051

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6I7O_051 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.289

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6I7O|1|YQ|G|1230
6I7O|1|YQ|A|1231
6I7O|1|YQ|C|1232
*
6I7O|1|YQ|G|1256
6I7O|1|YQ|C|1257
6I7O|1|YQ|U|1258
6I7O|1|YQ|A|1259
6I7O|1|YQ|A|1260
6I7O|1|YQ|G|1261
6I7O|1|YQ|G|1262
*
6I7O|1|YQ|C|1277
6I7O|1|YQ|A|1278
6I7O|1|YQ|C|1279

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain YU

60S acidic ribosomal protein P0