J3_6I7O_068

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6I7O|1|2b|A|46, 6I7O|1|2b|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6I7O_068 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0845

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6I7O|1|2b|A|41
6I7O|1|2b|G|42
6I7O|1|2b|A|43
6I7O|1|2b|U|44
6I7O|1|2b|U|45
6I7O|1|2b|A|46
6I7O|1|2b|A|47
6I7O|1|2b|G|48
*
6I7O|1|2b|C|431
6I7O|1|2b|G|432
6I7O|1|2b|C|433
6I7O|1|2b|G|434
6I7O|1|2b|C|435
6I7O|1|2b|A|436
6I7O|1|2b|A|437
6I7O|1|2b|A|438
6I7O|1|2b|U|439
*
6I7O|1|2b|A|464
6I7O|1|2b|G|465
6I7O|1|2b|U|466

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Wb

40S ribosomal protein S9-A

Chain cb

40S ribosomal protein S23-A