J3_6I7O_076
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6I7O|1|BQ|A|398, 6I7O|1|BQ|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6I7O_076 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0859
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6I7O|1|BQ|A|369
6I7O|1|BQ|U|370
6I7O|1|BQ|G|371
6I7O|1|BQ|A|372
6I7O|1|BQ|A|373
6I7O|1|BQ|A|374
6I7O|1|BQ|A|375
6I7O|1|BQ|G|376
6I7O|1|BQ|A|377
6I7O|1|BQ|A|378
6I7O|1|BQ|C|379
*
6I7O|1|BQ|G|390
6I7O|1|BQ|A|391
6I7O|1|BQ|G|392
6I7O|1|BQ|U|393
6I7O|1|BQ|G|394
6I7O|1|BQ|A|395
6I7O|1|BQ|A|396
6I7O|1|BQ|A|397
6I7O|1|BQ|A|398
6I7O|1|BQ|A|399
6I7O|1|BQ|G|400
6I7O|1|BQ|U|401
6I7O|1|BQ|A|402
6I7O|1|BQ|C|403
6I7O|1|BQ|G|404
*
6I7O|1|BS|C|19
6I7O|1|BS|U|20
Current chains
- Chain BQ
- 25S ribosomal RNA
- Chain BS
- 5.8S ribosomal RNA
Nearby chains
- Chain AK
- 60S ribosomal protein L26-A
- Chain AL
- 60S ribosomal protein L39
- Chain AX
- 60S ribosomal protein L17-A
- Chain BE
- 60S ribosomal protein L4-A
Coloring options: