3D structure

PDB id
6I7O (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
AGACG*CC*GAAAAU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6I7O_087 not in the Motif Atlas
Homologous match to J3_8P9A_058
Geometric discrepancy: 0.113
The information below is about J3_8P9A_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_12393.2
Basepair signature
cWW-tSH-tHH-F-F-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

6I7O|1|YQ|A|1654
6I7O|1|YQ|G|1655
6I7O|1|YQ|A|1656
6I7O|1|YQ|C|1657
6I7O|1|YQ|G|1658
*
6I7O|1|YQ|C|1791
6I7O|1|YQ|C|1792
*
6I7O|1|YQ|G|1796
6I7O|1|YQ|A|1797
6I7O|1|YQ|A|1798
6I7O|1|YQ|A|1799
6I7O|1|YQ|A|1800
6I7O|1|YQ|U|1801

Current chains

Chain YQ
25S ribosomal RNA

Nearby chains

Chain XT
60S ribosomal protein L43-A
Chain XW
60S ribosomal protein L2-A
Chain YN
60S ribosomal protein L34-A

Coloring options:


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