J3_6I7O_087
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- AGACG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6I7O_087 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.113
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12393.2
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6I7O|1|YQ|A|1654
6I7O|1|YQ|G|1655
6I7O|1|YQ|A|1656
6I7O|1|YQ|C|1657
6I7O|1|YQ|G|1658
*
6I7O|1|YQ|C|1791
6I7O|1|YQ|C|1792
*
6I7O|1|YQ|G|1796
6I7O|1|YQ|A|1797
6I7O|1|YQ|A|1798
6I7O|1|YQ|A|1799
6I7O|1|YQ|A|1800
6I7O|1|YQ|U|1801
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XT
- 60S ribosomal protein L43-A
- Chain XW
- 60S ribosomal protein L2-A
- Chain YN
- 60S ribosomal protein L34-A
Coloring options: