J3_6I7O_088
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- AUUG*CUUAU*AGACAUU
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6I7O_088 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.2615
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97609.1
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6I7O|1|YQ|A|2432
6I7O|1|YQ|U|2433
6I7O|1|YQ|U|2434
6I7O|1|YQ|G|2435
*
6I7O|1|YQ|C|2512
6I7O|1|YQ|U|2513
6I7O|1|YQ|U|2514
6I7O|1|YQ|A|2515
6I7O|1|YQ|U|2516
*
6I7O|1|YQ|A|2591
6I7O|1|YQ|G|2592
6I7O|1|YQ|A|2593
6I7O|1|YQ|C|2594
6I7O|1|YQ|A|2595
6I7O|1|YQ|U|2596
6I7O|1|YQ|U|2597
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain Qb
- 40S ribosomal protein S1-A
- Chain XA
- 60S ribosomal protein L8-A
- Chain XC
- 60S ribosomal protein L36-A
- Chain XQ
- 60S ribosomal protein L15-A
- Chain XW
- 60S ribosomal protein L2-A
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