J3_6I7O_092

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UCUUAG*CGAGAC*GCAAUA

Length

18 nucleotides

Bulged bases

6I7O|1|2|U|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6I7O_092 not in the Motif Atlas

Homologous match to J3_8P9A_080

Geometric discrepancy: 0.1384

The information below is about J3_8P9A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_99563.1

Basepair signature

cWW-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6I7O|1|2|U|1283
6I7O|1|2|C|1284
6I7O|1|2|U|1285
6I7O|1|2|U|1286
6I7O|1|2|A|1287
6I7O|1|2|G|1288
*
6I7O|1|2|C|1327
6I7O|1|2|G|1328
6I7O|1|2|A|1329
6I7O|1|2|G|1330
6I7O|1|2|A|1331
6I7O|1|2|C|1332
*
6I7O|1|2|G|1419
6I7O|1|2|C|1420
6I7O|1|2|A|1421
6I7O|1|2|A|1422
6I7O|1|2|U|1423
6I7O|1|2|A|1424

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

40S ribosomal protein S3

Chain F

40S ribosomal protein S16-A

Chain G

40S ribosomal protein S17-A

Chain J

40S ribosomal protein S20

Chain M

40S ribosomal protein S29-A

Chain R

40S ribosomal protein S2