J3_6I7V_010

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6I7V|1|AA|U|1240, 6I7V|1|AA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6I7V_010 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.0882

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6I7V|1|AA|C|1237
6I7V|1|AA|A|1238
6I7V|1|AA|A|1239
6I7V|1|AA|U|1240
6I7V|1|AA|G|1241
*
6I7V|1|AA|C|1296
6I7V|1|AA|G|1297
6I7V|1|AA|U|1298
6I7V|1|AA|A|1299
6I7V|1|AA|G|1300
6I7V|1|AA|U|1301
6I7V|1|AA|C|1302
6I7V|1|AA|C|1303
*
6I7V|1|AA|G|1334
6I7V|1|AA|U|1335
6I7V|1|AA|C|1336
6I7V|1|AA|G|1337

Current chains

Chain AA

16S ribosmal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13