J3_6IP5_001

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

6IP5|1|1A|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|1A|C|112
6IP5|1|1A|A|113
6IP5|1|1A|G|114
6IP5|1|1A|C|115
6IP5|1|1A|G|116
*
6IP5|1|1A|C|155
6IP5|1|1A|G|156
6IP5|1|1A|U|157
6IP5|1|1A|A|158
6IP5|1|1A|C|159
6IP5|1|1A|G|160
*
6IP5|1|1A|C|275
6IP5|1|1A|C|276
6IP5|1|1A|G|277
6IP5|1|1A|G|278

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2B

60S ribosomal protein L7a

Chain 2F

60S ribosomal protein L13

Chain 2H

60S ribosomal protein L15

Chain 2b

60S ribosomal protein L35

Chain 2c

60S ribosomal protein L36