J3_6IP5_021

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

6IP5|1|2m|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|2m|C|1094
6IP5|1|2m|U|1095
6IP5|1|2m|G|1096
*
6IP5|1|2m|U|1136
6IP5|1|2m|U|1137
6IP5|1|2m|C|1138
6IP5|1|2m|C|1139
6IP5|1|2m|G|1140
*
6IP5|1|2m|C|1147
6IP5|1|2m|A|1148
6IP5|1|2m|A|1149
6IP5|1|2m|A|1150
6IP5|1|2m|G|1151

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2n

40S ribosomal protein SA

Chain 3A

40S ribosomal protein S21

Chain 3C

40S ribosomal protein S26

Chain 3M

40S ribosomal protein S15a

Chain 3P

40S ribosomal protein S27