J3_6IP5_027

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6IP5_027 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.1882

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6IP5|1|2m|U|1350
6IP5|1|2m|G|1351
*
6IP5|1|2m|U|1360
6IP5|1|2m|G|1361
6IP5|1|2m|U|1362
6IP5|1|2m|C|1363
*
6IP5|1|2m|G|1375
6IP5|1|2m|A|1376
6IP5|1|2m|U|1377
6IP5|1|2m|A|1378
6IP5|1|2m|A|1379

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2n

40S ribosomal protein SA

Chain 2y

40S ribosomal protein S17

Chain 3G

40S ribosomal protein S2