J3_6IP5_040
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UCUUAG*CGAGACU*AGCAAUA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP5_040 not in the Motif Atlas
- Geometric match to J3_4LFB_007
- Geometric discrepancy: 0.3716
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6IP5|1|2m|U|1340
6IP5|1|2m|C|1341
6IP5|1|2m|U|1342
6IP5|1|2m|U|1343
6IP5|1|2m|A|1344
6IP5|1|2m|G|1345
*
6IP5|1|2m|C|1384
6IP5|1|2m|G|1385
6IP5|1|2m|A|1386
6IP5|1|2m|G|1387
6IP5|1|2m|A|1388
6IP5|1|2m|C|1389
6IP5|1|2m|U|1390
*
6IP5|1|2m|A|1480
6IP5|1|2m|G|1481
6IP5|1|2m|C|1482
6IP5|1|2m|A|1483
6IP5|1|2m|A|1484
6IP5|1|2m|U|1485
6IP5|1|2m|A|1486
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 21
- 40S ribosomal protein S20
- Chain 2p
- 40S ribosomal protein S3
- Chain 2x
- 40S ribosomal protein S16
- Chain 2y
- 40S ribosomal protein S17
- Chain 3E
- 40S ribosomal protein S29
- Chain 3G
- 40S ribosomal protein S2
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