J3_6IP6_001
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CAGCG*CGUACG*CCGG
- Length
- 15 nucleotides
- Bulged bases
- 6IP6|1|1A|C|159
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP6|1|1A|C|112
6IP6|1|1A|A|113
6IP6|1|1A|G|114
6IP6|1|1A|C|115
6IP6|1|1A|G|116
*
6IP6|1|1A|C|155
6IP6|1|1A|G|156
6IP6|1|1A|U|157
6IP6|1|1A|A|158
6IP6|1|1A|C|159
6IP6|1|1A|G|160
*
6IP6|1|1A|C|275
6IP6|1|1A|C|276
6IP6|1|1A|G|277
6IP6|1|1A|G|278
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2B
- 60S ribosomal protein L7a
- Chain 2F
- 60S ribosomal protein L13
- Chain 2H
- 60S ribosomal protein L15
- Chain 2b
- 60S ribosomal protein L35
- Chain 2c
- 60S ribosomal protein L36
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