J3_6IP6_008
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP6_008 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.177
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6IP6|1|1A|U|2440
6IP6|1|1A|C|2441
6IP6|1|1A|G|2442
6IP6|1|1A|G|2443
6IP6|1|1A|U|2444
6IP6|1|1A|C|2445
*
6IP6|1|1A|G|2515
6IP6|1|1A|G|2516
6IP6|1|1A|A|2517
6IP6|1|1A|G|2518
6IP6|1|1A|U|2519
*
6IP6|1|1A|A|2536
6IP6|1|1A|A|2537
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 2R
- 60S ribosomal protein L23a
- Chain 2a
- 60S ribosomal protein L34
- Chain 2e
- 60S ribosomal protein L38
- Chain 2f
- 60S ribosomal protein L39
Coloring options: