J3_6IP6_030
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 6IP6|1|1A|G|409, 6IP6|1|1A|G|413
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP6_030 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.329
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6IP6|1|1A|U|380
6IP6|1|1A|U|381
6IP6|1|1A|G|382
6IP6|1|1A|A|383
6IP6|1|1A|A|384
6IP6|1|1A|A|385
6IP6|1|1A|A|386
6IP6|1|1A|G|387
6IP6|1|1A|A|388
6IP6|1|1A|A|389
6IP6|1|1A|C|390
*
6IP6|1|1A|G|401
6IP6|1|1A|A|402
6IP6|1|1A|G|403
6IP6|1|1A|U|404
6IP6|1|1A|U|405
6IP6|1|1A|C|406
6IP6|1|1A|A|407
6IP6|1|1A|A|408
6IP6|1|1A|G|409
6IP6|1|1A|A|410
6IP6|1|1A|G|411
6IP6|1|1A|G|412
6IP6|1|1A|G|413
6IP6|1|1A|C|414
6IP6|1|1A|G|415
*
6IP6|1|1C|C|19
6IP6|1|1C|A|20
Current chains
- Chain 1A
- 28S ribosomal RNA
- Chain 1C
- 5.8S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 2J
- 60S ribosomal protein L17
- Chain 2S
- 60S ribosomal protein L26
- Chain 2f
- 60S ribosomal protein L39
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