J3_6IP8_002
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUGAAAAG*CG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP8_002 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.1503
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
6IP8|1|1A|U|380
6IP8|1|1A|U|381
6IP8|1|1A|G|382
6IP8|1|1A|A|383
6IP8|1|1A|A|384
6IP8|1|1A|A|385
6IP8|1|1A|A|386
6IP8|1|1A|G|387
*
6IP8|1|1A|C|414
6IP8|1|1A|G|415
*
6IP8|1|1C|C|19
6IP8|1|1C|A|20
Current chains
- Chain 1A
- 28S ribosomal RNA
- Chain 1C
- 5.8S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 2S
- 60S ribosomal protein L26
- Chain 2f
- 60S ribosomal protein L39
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