J3_6IP8_012
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP8_012 not in the Motif Atlas
- Geometric match to J3_8VTW_006
- Geometric discrepancy: 0.3797
- The information below is about J3_8VTW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.4
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
6IP8|1|1A|C|3937
6IP8|1|1A|G|3938
6IP8|1|1A|G|3939
*
6IP8|1|1A|C|4074
6IP8|1|1A|U|4075
6IP8|1|1A|G|4076
6IP8|1|1A|A|4077
6IP8|1|1A|C|4078
*
6IP8|1|1A|G|4168
6IP8|1|1A|G|4169
6IP8|1|1A|A|4170
6IP8|1|1A|C|4171
6IP8|1|1A|A|4172
6IP8|1|1A|G|4173
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 2B
- 60S ribosomal protein L7a
- Chain 2H
- 60S ribosomal protein L15
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