J3_6IP8_035
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 6IP8|1|1A|C|2470, 6IP8|1|1A|A|2472, 6IP8|1|1A|G|2475, 6IP8|1|1A|G|2503, 6IP8|1|1A|C|2504
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP8_035 not in the Motif Atlas
- Homologous match to J3_8C3A_053
- Geometric discrepancy: 0.5782
- The information below is about J3_8C3A_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34234.1
- Basepair signature
- cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6IP8|1|1A|A|2451
6IP8|1|1A|G|2452
6IP8|1|1A|A|2453
6IP8|1|1A|U|2454
6IP8|1|1A|G|2455
6IP8|1|1A|G|2456
*
6IP8|1|1A|C|2465
6IP8|1|1A|G|2466
6IP8|1|1A|U|2467
6IP8|1|1A|U|2468
6IP8|1|1A|C|2469
6IP8|1|1A|C|2470
6IP8|1|1A|G|2471
6IP8|1|1A|A|2472
6IP8|1|1A|A|2473
6IP8|1|1A|G|2474
6IP8|1|1A|G|2475
6IP8|1|1A|G|2476
*
6IP8|1|1A|C|2501
6IP8|1|1A|G|2502
6IP8|1|1A|G|2503
6IP8|1|1A|C|2504
6IP8|1|1A|C|2505
6IP8|1|1A|G|2506
6IP8|1|1A|A|2507
6IP8|1|1A|U|2508
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 1D
- 60S ribosomal protein L8
- Chain 2B
- 60S ribosomal protein L7a
- Chain 2H
- 60S ribosomal protein L15
- Chain 2R
- 60S ribosomal protein L23a
- Chain 2d
- 60S ribosomal protein L37
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