J3_6IP8_036
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGAAG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP8_036 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.1782
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.1
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6IP8|1|1A|A|2598
6IP8|1|1A|G|2599
6IP8|1|1A|A|2600
6IP8|1|1A|A|2601
6IP8|1|1A|G|2602
*
6IP8|1|1A|C|2737
6IP8|1|1A|C|2738
*
6IP8|1|1A|G|2742
6IP8|1|1A|A|2743
6IP8|1|1A|A|2744
6IP8|1|1A|A|2745
6IP8|1|1A|A|2746
6IP8|1|1A|U|2747
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 2a
- 60S ribosomal protein L34
- Chain 2j
- 60S ribosomal protein L37a
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