J3_6IP8_038
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 6IP8|1|1A|U|4374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP8_038 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.111
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6IP8|1|1A|G|4228
6IP8|1|1A|U|4229
6IP8|1|1A|C|4230
*
6IP8|1|1A|G|4331
6IP8|1|1A|C|4332
6IP8|1|1A|C|4333
6IP8|1|1A|U|4334
6IP8|1|1A|C|4335
6IP8|1|1A|A|4336
6IP8|1|1A|C|4337
6IP8|1|1A|G|4338
6IP8|1|1A|A|4339
6IP8|1|1A|U|4340
6IP8|1|1A|C|4341
6IP8|1|1A|C|4342
*
6IP8|1|1A|G|4370
6IP8|1|1A|G|4371
6IP8|1|1A|U|4372
6IP8|1|1A|G|4373
6IP8|1|1A|U|4374
6IP8|1|1A|C|4375
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2K
- 60S ribosomal protein L18
- Chain 2N
- 60S ribosomal protein L21
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2i
- 60S ribosomal protein L36a
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