J3_6IP8_046
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 6IP8|1|2m|C|1273, 6IP8|1|2m|G|1274, 6IP8|1|2m|G|1507, 6IP8|1|2m|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP8_046 not in the Motif Atlas
- Homologous match to J3_8CRE_081
- Geometric discrepancy: 0.3991
- The information below is about J3_8CRE_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_87797.2
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
6IP8|1|2m|C|1272
6IP8|1|2m|C|1273
6IP8|1|2m|G|1274
6IP8|1|2m|G|1275
6IP8|1|2m|A|1276
6IP8|1|2m|C|1277
*
6IP8|1|2m|G|1320
6IP8|1|2m|G|1321
6IP8|1|2m|G|1322
6IP8|1|2m|U|1323
6IP8|1|2m|G|1324
*
6IP8|1|2m|U|1504
6IP8|1|2m|U|1505
6IP8|1|2m|A|1506
6IP8|1|2m|G|1507
6IP8|1|2m|A|1508
6IP8|1|2m|U|1509
6IP8|1|2m|G|1510
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2u
- 40S ribosomal protein S10
- Chain 3E
- 40S ribosomal protein S29
- Chain 3R
- Ubiquitin-40S ribosomal protein S27a
- Chain zw
- Eukaryotic peptide chain release factor subunit 1
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