3D structure

PDB id
6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6LKQ_007 not in the Motif Atlas
Homologous match to J3_5J7L_008
Geometric discrepancy: 0.094
The information below is about J3_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6LKQ|1|s|C|1063
6LKQ|1|s|G|1064
6LKQ|1|s|U|1065
6LKQ|1|s|C|1066
6LKQ|1|s|A|1067
6LKQ|1|s|G|1068
*
6LKQ|1|s|C|1107
6LKQ|1|s|G|1108
6LKQ|1|s|C|1109
6LKQ|1|s|A|1110
6LKQ|1|s|A|1111
6LKQ|1|s|C|1112
6LKQ|1|s|C|1113
*
6LKQ|1|s|G|1187
6LKQ|1|s|A|1188
6LKQ|1|s|U|1189
6LKQ|1|s|G|1190
6LKQ|1|s|A|1191
6LKQ|1|s|C|1192
6LKQ|1|s|G|1193

Current chains

Chain s
16S ribosomal RNA

Nearby chains

Chain A
30S ribosomal protein S2
Chain B
30S ribosomal protein S3
Chain D
30S ribosomal protein S5
Chain H
30S ribosomal protein S9
Chain I
30S ribosomal protein S10
Chain M
30S ribosomal protein S14

Coloring options:


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