3D structure

PDB id
6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
6LKQ|1|t|U|2833, 6LKQ|1|t|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6LKQ_023 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.1618
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

6LKQ|1|t|G|2812
6LKQ|1|t|A|2813
6LKQ|1|t|A|2814
6LKQ|1|t|C|2815
*
6LKQ|1|t|G|2831
6LKQ|1|t|U|2832
6LKQ|1|t|U|2833
6LKQ|1|t|G|2834
6LKQ|1|t|A|2835
6LKQ|1|t|U|2836
*
6LKQ|1|t|A|2882
6LKQ|1|t|A|2883
6LKQ|1|t|U|2884
6LKQ|1|t|G|2885
6LKQ|1|t|A|2886
6LKQ|1|t|A|2887
6LKQ|1|t|C|2888

Current chains

Chain t
23S ribosomal RNA

Nearby chains

Chain 4
50S ribosomal protein L17
Chain V
50S ribosomal protein L3
Chain a
50S ribosomal protein L22
Chain i
50S ribosomal protein L32

Coloring options:


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