J3_6LKQ_033
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6LKQ|1|t|U|34, 6LKQ|1|t|U|448, 6LKQ|1|t|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6LKQ_033 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0674
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6LKQ|1|t|C|32
6LKQ|1|t|C|33
6LKQ|1|t|U|34
6LKQ|1|t|G|35
*
6LKQ|1|t|C|445
6LKQ|1|t|G|446
6LKQ|1|t|A|447
6LKQ|1|t|U|448
6LKQ|1|t|A|449
6LKQ|1|t|G|450
6LKQ|1|t|U|451
6LKQ|1|t|G|452
6LKQ|1|t|A|453
6LKQ|1|t|A|454
6LKQ|1|t|C|455
6LKQ|1|t|C|456
6LKQ|1|t|A|457
6LKQ|1|t|G|458
6LKQ|1|t|U|459
6LKQ|1|t|A|460
6LKQ|1|t|C|461
*
6LKQ|1|t|G|468
6LKQ|1|t|G|469
6LKQ|1|t|A|470
6LKQ|1|t|A|471
6LKQ|1|t|A|472
6LKQ|1|t|G|473
Current chains
- Chain t
- 23S ribosomal RNA
Nearby chains
- Chain 8
- 50S ribosomal protein L20
- Chain W
- 50S ribosomal protein L4
- Chain b
- 50S ribosomal protein L23
- Chain k
- 50S ribosomal protein L34
Coloring options: