J3_6LQM_018
3D structure
- PDB id
- 6LQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 6LQM|1|8|A|62, 6LQM|1|8|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6LQM_018 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.1797
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
6LQM|1|8|A|44
6LQM|1|8|C|45
*
6LQM|1|8|G|58
6LQM|1|8|A|59
6LQM|1|8|G|60
6LQM|1|8|A|61
6LQM|1|8|A|62
6LQM|1|8|U|63
6LQM|1|8|U|64
*
6LQM|1|8|A|95
6LQM|1|8|C|96
6LQM|1|8|A|97
6LQM|1|8|C|98
6LQM|1|8|U|99
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L35
- Chain M
- 60S ribosomal protein L37
- Chain P
- 60S ribosomal protein L39
- Chain g
- 60S ribosomal protein L23a
Coloring options: