J3_6LQP_002
3D structure
- PDB id
- 6LQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGA*UAAUA*UA
- Length
- 10 nucleotides
- Bulged bases
- 6LQP|1|SA|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6LQP_002 not in the Motif Atlas
- Geometric match to J3_4V88_080
- Geometric discrepancy: 0.1838
- The information below is about J3_4V88_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.3
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6LQP|1|SA|U|633
6LQP|1|SA|G|634
6LQP|1|SA|A|635
*
6LQP|1|SA|U|861
6LQP|1|SA|A|862
6LQP|1|SA|A|863
6LQP|1|SA|U|864
6LQP|1|SA|A|865
*
6LQP|1|SA|U|965
6LQP|1|SA|A|966
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain RC
- KRR1 small subunit processome component
- Chain RV
- Protein FAF1
- Chain SI
- 40S ribosomal protein S7-A
- Chain SO
- 40S ribosomal protein S13
- Chain SX
- 40S ribosomal protein S22-B
- Chain Sc
- 40S ribosomal protein S27-A
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