J3_6LQS_006
3D structure
- PDB id
- 6LQS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6LQS_006 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.25
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6LQS|1|SA|C|1161
6LQS|1|SA|C|1162
6LQS|1|SA|A|1163
6LQS|1|SA|G|1164
*
6LQS|1|SA|C|1581
6LQS|1|SA|U|1582
6LQS|1|SA|A|1583
6LQS|1|SA|G|1584
6LQS|1|SA|U|1585
6LQS|1|SA|A|1586
6LQS|1|SA|A|1587
*
6LQS|1|SA|U|1609
6LQS|1|SA|G|1610
6LQS|1|SA|A|1611
6LQS|1|SA|U|1612
6LQS|1|SA|U|1613
6LQS|1|SA|A|1614
6LQS|1|SA|C|1615
6LQS|1|SA|G|1616
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5G
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain B1
- Periodic tryptophan protein 2
- Chain SG
- 40S ribosomal protein S5
- Chain SR
- 40S ribosomal protein S16-A
- Chain Sd
- 40S ribosomal protein S28-A
Coloring options: