J3_6LQV_004

3D structure

PDB id

6LQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LQV_004 not in the Motif Atlas

Homologous match to J3_4V88_036

Geometric discrepancy: 0.2743

The information below is about J3_4V88_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.2

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6LQV|1|SA|U|1168
6LQV|1|SA|G|1169
6LQV|1|SA|G|1170
6LQV|1|SA|A|1171
*
6LQV|1|SA|U|1468
6LQV|1|SA|A|1469
6LQV|1|SA|C|1470
*
6LQV|1|SA|G|1574
6LQV|1|SA|G|1575
6LQV|1|SA|A|1576
6LQV|1|SA|A|1577

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain 5G

U3 small nucleolar ribonucleoprotein protein IMP4

Chain RH

Ribosomal RNA small subunit methyltransferase NEP1

Chain RN

Nucleolar complex protein 14