J3_6LSR_013

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LSR_013 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1367

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6LSR|1|2|C|3937
6LSR|1|2|G|3938
6LSR|1|2|G|3939
*
6LSR|1|2|C|4074
6LSR|1|2|U|4075
6LSR|1|2|G|4076
6LSR|1|2|A|4077
6LSR|1|2|C|4078
*
6LSR|1|2|G|4168
6LSR|1|2|G|4169
6LSR|1|2|A|4170
6LSR|1|2|C|4171
6LSR|1|2|A|4172
6LSR|1|2|G|4173

Current chains

Chain 2

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain U

60S ribosomal protein L15

Chain m

60S ribosomal protein L8