J3_6LSS_007

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GAAG*C(B9H)AUAUC*GUC

Length

14 nucleotides

Bulged bases

6LSS|1|2|U|2788, 6LSS|1|2|A|2789

QA status

Modified nucleotides: B9H

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LSS_007 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.0947

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6LSS|1|2|G|2402
6LSS|1|2|A|2403
6LSS|1|2|A|2404
6LSS|1|2|G|2405
*
6LSS|1|2|C|2785
6LSS|1|2|B9H|2786
6LSS|1|2|A|2787
6LSS|1|2|U|2788
6LSS|1|2|A|2789
6LSS|1|2|U|2790
6LSS|1|2|C|2791
*
6LSS|1|2|G|2800
6LSS|1|2|U|2801
6LSS|1|2|C|2802

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain M

60S ribosomal protein L37

Chain P

60S ribosomal protein L39