J3_6LSS_022

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

6LSS|1|2|A|1805, 6LSS|1|2|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LSS_022 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4604

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6LSS|1|2|U|1726
6LSS|1|2|U|1727
*
6LSS|1|2|A|1802
6LSS|1|2|G|1803
6LSS|1|2|A|1804
6LSS|1|2|A|1805
6LSS|1|2|G|1806
*
6LSS|1|2|C|1832
6LSS|1|2|G|1833
6LSS|1|2|U|1834
6LSS|1|2|G|1835
6LSS|1|2|G|1836
6LSS|1|2|A|1837

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain c

60S ribosomal protein L21

Chain p

60S ribosomal protein L7