J3_6M62_007

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6M62_007 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2898

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6M62|1|1|G|1230
6M62|1|1|A|1231
6M62|1|1|C|1232
*
6M62|1|1|G|1256
6M62|1|1|C|1257
6M62|1|1|U|1258
6M62|1|1|A|1259
6M62|1|1|A|1260
6M62|1|1|G|1261
6M62|1|1|G|1262
*
6M62|1|1|C|1277
6M62|1|1|A|1278
6M62|1|1|C|1279

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain W

Ribosome assembly factor MRT4

Chain r

Ribosome biogenesis protein NSA2