J3_6M62_019
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 6M62|1|1|U|343, 6M62|1|1|A|351, 6M62|1|2|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6M62_019 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0692
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6M62|1|1|C|340
6M62|1|1|G|341
6M62|1|1|A|342
6M62|1|1|U|343
6M62|1|1|A|344
6M62|1|1|G|345
6M62|1|1|C|346
6M62|1|1|G|347
6M62|1|1|A|348
6M62|1|1|A|349
6M62|1|1|C|350
6M62|1|1|A|351
6M62|1|1|A|352
6M62|1|1|G|353
6M62|1|1|U|354
6M62|1|1|A|355
6M62|1|1|C|356
*
6M62|1|1|G|363
6M62|1|1|G|364
6M62|1|1|A|365
6M62|1|1|A|366
6M62|1|1|A|367
6M62|1|1|G|368
*
6M62|1|2|C|21
6M62|1|2|U|22
6M62|1|2|U|23
6M62|1|2|G|24
Current chains
- Chain 1
- RDN25-1 rRNA
- Chain 2
- RDN58-1 rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
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