J3_6M62_026
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 6M62|1|2|U|60, 6M62|1|2|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6M62_026 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0845
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6M62|1|2|A|44
6M62|1|2|C|45
*
6M62|1|2|G|58
6M62|1|2|A|59
6M62|1|2|U|60
6M62|1|2|A|61
6M62|1|2|C|62
6M62|1|2|G|63
6M62|1|2|U|64
*
6M62|1|2|A|96
6M62|1|2|A|97
6M62|1|2|U|98
6M62|1|2|C|99
6M62|1|2|U|100
Current chains
- Chain 2
- RDN58-1 rRNA
Nearby chains
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
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