J3_6MKN_004
3D structure
- PDB id
- 6MKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.46 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 6MKN|1|A|U|871, 6MKN|1|A|A|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6MKN_004 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.0609
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
6MKN|1|A|C|826
6MKN|1|A|U|827
6MKN|1|A|A|828
6MKN|1|A|G|829
*
6MKN|1|A|C|857
6MKN|1|A|G|858
6MKN|1|A|A|859
6MKN|1|A|A|860
6MKN|1|A|G|861
*
6MKN|1|A|C|868
6MKN|1|A|G|869
6MKN|1|A|U|870
6MKN|1|A|U|871
6MKN|1|A|A|872
6MKN|1|A|A|873
6MKN|1|A|G|874
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain H
- 30S ribosomal protein S8
Coloring options: