J3_6MKN_020

3D structure

PDB id

6MKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6MKN|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MKN_020 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1474

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6MKN|1|A|C|990
6MKN|1|A|U|991
6MKN|1|A|U|992
6MKN|1|A|G|993
6MKN|1|A|A|994
6MKN|1|A|C|995
6MKN|1|A|A|996
6MKN|1|A|U|997
*
6MKN|1|A|A|1044
6MKN|1|A|C|1045
6MKN|1|A|A|1046
6MKN|1|A|G|1047
*
6MKN|1|A|C|1210
6MKN|1|A|U|1211
6MKN|1|A|U|1212
6MKN|1|A|A|1213
6MKN|1|A|C|1214
6MKN|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z